UPDATE: All Discovery shows, including Whale Wars have been removed from Netflix on October 5th, 2014. Amazon is supposed to be getting exclusive rights to it, but they don’t seem to be free with Prime yet. We’ll keep you updated. Here are the episodes on Amazon.
9, 2, 11, 12, 3, 8, 7, 6, 4, 1, 5, 10
Order was reported wrong on 8/27/2011. New order will be put up shortly.
Notes: There is a 13th episode added after the initial airing of the show, which is only available on DVD. Due to potential spoilers in the plot, it will not be named or described outside of spoiler tags.
Please don’t give spoilers in the comments.